Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs59301753 chr1:16365210 C/A 1.53E-6 174 15.37 15.53 3.43 KM Plot
PAAD rs59463001 chr21:44222743 C/T 2.05E-5 170 3.67 14.87 15.87 KM Plot
PAAD rs59478289 chr21:44222753 A/G 2.05E-5 170 3.67 14.87 15.87 KM Plot
PAAD rs59727076 chr2:128531384 C/T 7.9E-10 178 15.62 12.6 2.2 KM Plot
PAAD rs59753874 chr2:70470437 T/C 0 178 15.37 17.4 1.03 KM Plot
PAAD rs59844893 chr2:70475009 T/C 0 178 15.37 17.4 1.03 KM Plot
PAAD rs59876127 chr2:70462720 T/C 0 178 15.37 17.4 1.03 KM Plot
PAAD rs59940583 chr3:39052663 A/C 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs60008880 chr2:70491647 T/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs60039181 chr2:70470358 G/A 0 178 15.33 18.43 1.03 KM Plot
PAAD rs60296501 chr8:61646204 C/T 3.65E-5 173 16.28 11.2 4.27 KM Plot
PAAD rs60392216 chr3:39131248 T/C 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs6041 chr13:113772707 G/A 1.56E-12 174 15.43 15.1 1.37 KM Plot
PAAD rs60445842 chr15:81671950 C/T 0 170 15.37 16.48 1.78 KM Plot
PAAD rs6046 chr13:113773159 G/A 1.56E-12 174 15.43 15.1 1.37 KM Plot